{
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  "Package": "gMCP",
  "Type": "Package",
  "Title": "Graph Based Multiple Comparison Procedures",
  "Version": "0.8-17",
  "Authors@R": "c(person(\"Kornelius\", \"Rohmeyer\", role = c(\"aut\", \"cre\"),  email = \"rohmeyer@small-projects.de\"),\nperson(\"Florian\", \"Klinglmueller\", role = \"aut\", email = \"float@lefant.net\"))",
  "Maintainer": "Kornelius Rohmeyer <rohmeyer@small-projects.de>",
  "Description": "Functions and a graphical user interface for graphical\ndescribed multiple test procedures.",
  "VignetteBuilder": "knitr",
  "SystemRequirements": "Java (>= 5.0)",
  "License": "GPL (>= 2)",
  "URL": "https://github.com/kornl/gMCP",
  "BugReports": "https://github.com/kornl/gMCP/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
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  "Config/pak/sysreqs": "make default-jdk",
  "Repository": "https://kornl.r-universe.dev",
  "Date/Publication": "2024-03-23 20:35:49 UTC",
  "RemoteUrl": "https://github.com/kornl/gmcp",
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  "Packaged": {
    "Date": "2026-05-13 06:25:56 UTC",
    "User": "root"
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  "Author": "Kornelius Rohmeyer [aut, cre],\nFlorian Klinglmueller [aut]",
  "MD5sum": "3bb39a668e447f7a088998ef0b93bead",
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      "date": "2013-06-14"
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      "version": "0.8-4",
      "date": "2013-07-15"
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    {
      "version": "0.8-5",
      "date": "2013-07-18"
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    {
      "version": "0.8-6",
      "date": "2014-02-17"
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    {
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      "date": "2014-08-26"
    },
    {
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      "date": "2014-10-02"
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    {
      "version": "0.8-9",
      "date": "2015-08-10"
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    {
      "version": "0.8-10",
      "date": "2015-08-31"
    },
    {
      "version": "0.8-11",
      "date": "2017-11-13"
    },
    {
      "version": "0.8-12",
      "date": "2017-12-04"
    },
    {
      "version": "0.8-13",
      "date": "2017-12-11"
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    {
      "version": "0.8-14",
      "date": "2018-07-09"
    },
    {
      "version": "0.8-15",
      "date": "2020-03-23"
    },
    {
      "version": "0.8-16",
      "date": "2023-11-29"
    },
    {
      "version": "0.8-17",
      "date": "2024-03-26"
    }
  ],
  "_exports": [
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    "bdiagNA",
    "bonferroni.test",
    "bonferroni.trimmed.simes.test",
    "BonferroniHolm",
    "BretzEtAl2009a",
    "BretzEtAl2009b",
    "BretzEtAl2009c",
    "BretzEtAl2011",
    "calcPower",
    "corMatWizard",
    "cycleGraph",
    "doInterim",
    "edgeAttr",
    "edgeAttr<-",
    "Entangled1Maurer2012",
    "Entangled2Maurer2012",
    "extractPower",
    "fallback",
    "Ferber2011",
    "FerberTimeDose2011",
    "fixedSequence",
    "generalSuccessive",
    "generateBounds",
    "generatePvals",
    "generateTest",
    "generateWeights",
    "getJavaInfo",
    "getMatrices",
    "getMatrix",
    "getNodes",
    "getRejected",
    "getWeights",
    "getXCoordinates",
    "getYCoordinates",
    "gMCP",
    "gMCP.extended",
    "gMCPReport",
    "graph2latex",
    "graph2matrix",
    "graphAnalysis",
    "graphGUI",
    "graphTest",
    "HommelEtAl2007",
    "HommelEtAl2007Simple",
    "HungEtWang2010",
    "HuqueAloshEtBhore2011",
    "improvedFallbackI",
    "improvedFallbackII",
    "improvedParallelGatekeeping",
    "joinGraphs",
    "matrix2graph",
    "MaurerEtAl1995",
    "nodeAttr",
    "nodeAttr<-",
    "parallelGatekeeping",
    "parametric.test",
    "placeNodes",
    "plot",
    "plotSimCI",
    "print",
    "rejectNode",
    "replaceVariables",
    "rqmvnorm",
    "sampSize",
    "secondStageTest",
    "setEdge",
    "setRejected<-",
    "setWeights",
    "simConfint",
    "simes.on.subsets.test",
    "simes.test",
    "simpleSuccessiveI",
    "simpleSuccessiveII",
    "subgraph",
    "substituteEps",
    "truncatedHolm",
    "unitTestsGMCP",
    "WangTing2014"
  ],
  "_datasets": [
    {
      "name": "hydroquinone",
      "title": "Hydroquinone Mutagenicity Assay",
      "object": "hydroquinone",
      "file": "hydroquinone.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "micronuclei"
      ],
      "rows": 31,
      "table": true,
      "tojson": true
    },
    {
      "name": "simvastatin",
      "title": "Simvastatin and Colesevelam Treatment in Patients with Primary Hypercholesterolemia",
      "object": "simvastatin",
      "file": "simvastatin.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "sampleSize",
        "means",
        "sd",
        "adverseEvents"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "gMCP-package",
      "title": "Graphical described Multiple Comparison Procedures",
      "topics": [
        "gMCP-package"
      ]
    },
    {
      "page": "bdiagNA",
      "title": "Create a Block Diagonal Matrix with NA outside the diagonal",
      "topics": [
        "bdiagNA"
      ]
    },
    {
      "page": "bonferroni.test",
      "title": "Weighted Bonferroni-test",
      "topics": [
        "bonferroni.test"
      ]
    },
    {
      "page": "bonferroni.trimmed.simes.test",
      "title": "Trimmed Simes test for intersections of two hypotheses and otherwise weighted Bonferroni-test",
      "topics": [
        "bonferroni.trimmed.simes.test"
      ]
    },
    {
      "page": "calcPower",
      "title": "Calculate power values",
      "topics": [
        "calcPower"
      ]
    },
    {
      "page": "corMatWizard",
      "title": "Graphical User Interface for the creation of correlation matrices",
      "topics": [
        "corMatWizard"
      ]
    },
    {
      "page": "doInterim",
      "title": "EXPERIMENTAL: Evaluate conditional errors at interim for a pre-planned graphical procedure",
      "topics": [
        "doInterim"
      ]
    },
    {
      "page": "entangled",
      "title": "Class entangledMCP",
      "topics": [
        "entangledMCP",
        "entangledMCP-class",
        "getMatrices",
        "getMatrices,entangledMCP-method",
        "getNodes,entangledMCP-method",
        "getRejected,entangledMCP-method",
        "getWeights,entangledMCP-method",
        "getXCoordinates,entangledMCP-method",
        "getYCoordinates,entangledMCP-method",
        "print,entangledMCP-method"
      ]
    },
    {
      "page": "exampleGraphs",
      "title": "Functions that create different example graphs",
      "topics": [
        "BauerEtAl2001",
        "BonferroniHolm",
        "BretzEtAl2009a",
        "BretzEtAl2009b",
        "BretzEtAl2009c",
        "BretzEtAl2011",
        "cycleGraph",
        "Entangled1Maurer2012",
        "Entangled2Maurer2012",
        "exampleGraphs",
        "fallback",
        "Ferber2011",
        "FerberTimeDose2011",
        "fixedSequence",
        "generalSuccessive",
        "HommelEtAl2007",
        "HommelEtAl2007Simple",
        "HungEtWang2010",
        "HuqueAloshEtBhore2011",
        "improvedFallbackI",
        "improvedFallbackII",
        "improvedParallelGatekeeping",
        "MaurerEtAl1995",
        "parallelGatekeeping",
        "simpleSuccessiveI",
        "simpleSuccessiveII",
        "truncatedHolm",
        "WangTing2014"
      ]
    },
    {
      "page": "extractPower",
      "title": "Calculate power values",
      "topics": [
        "extractPower"
      ]
    },
    {
      "page": "generateBounds",
      "title": "generateBounds",
      "topics": [
        "generateBounds"
      ]
    },
    {
      "page": "generatePvals",
      "title": "generatePvals",
      "topics": [
        "generatePvals"
      ]
    },
    {
      "page": "generateTest",
      "title": "generateTest",
      "topics": [
        "generateTest"
      ]
    },
    {
      "page": "generateWeights",
      "title": "generateWeights",
      "topics": [
        "generateWeights"
      ]
    },
    {
      "page": "getJavaInfo",
      "title": "Get Memory and Runtime Info from JVM",
      "topics": [
        "getJavaInfo"
      ]
    },
    {
      "page": "gMCP",
      "title": "Graph based Multiple Comparison Procedures",
      "topics": [
        "gMCP"
      ]
    },
    {
      "page": "gMCP.extended",
      "title": "Graph based Multiple Comparison Procedures",
      "topics": [
        "gMCP.extended"
      ]
    },
    {
      "page": "gMCPReport",
      "title": "Automatic Generation of gMCP Reports",
      "topics": [
        "gMCPReport"
      ]
    },
    {
      "page": "gMCPResult",
      "title": "Class gMCPResult",
      "topics": [
        "getRejected,gMCPResult-method",
        "getWeights,gMCPResult-method",
        "gMCPResult",
        "gMCPResult-class",
        "plot,gMCPResult,ANY-method",
        "plot,gMCPResult-method",
        "print,gMCPResult-method"
      ]
    },
    {
      "page": "gPADInterim",
      "title": "Class gPADInterim",
      "topics": [
        "getRejected,gPADInterim-method",
        "getWeights,gPADInterim-method",
        "gPADInterim",
        "gPADInterim-class",
        "plot,gPADInterim-method",
        "print,gPADInterim-method"
      ]
    },
    {
      "page": "graph2latex",
      "title": "Graph2LaTeX",
      "topics": [
        "graph2latex"
      ]
    },
    {
      "page": "graphAnalysis",
      "title": "Analysis of a gMCP-Graph",
      "topics": [
        "graphAnalysis"
      ]
    },
    {
      "page": "graphGUI",
      "title": "Graphical User Interface for graphical described multiple comparison procedures",
      "topics": [
        "graphGUI"
      ]
    },
    {
      "page": "graphMCP",
      "title": "Class graphMCP",
      "topics": [
        "edgeAttr",
        "edgeAttr,graphMCP,character,character,character-method",
        "edgeAttr<-",
        "edgeAttr<-,graphMCP,character,character,character-method",
        "getMatrix",
        "getMatrix,graphMCP-method",
        "getNodes",
        "getNodes,graphMCP-method",
        "getRejected",
        "getRejected,graphMCP-method",
        "getWeights",
        "getWeights,graphMCP-method",
        "getXCoordinates",
        "getXCoordinates,graphMCP-method",
        "getYCoordinates",
        "getYCoordinates,graphMCP-method",
        "graphMCP",
        "graphMCP-class",
        "nodeAttr",
        "nodeAttr,graphMCP,character,character-method",
        "nodeAttr<-",
        "nodeAttr<-,graphMCP,character,character-method",
        "plot,graphMCP,ANY-method",
        "plot,graphMCP-method",
        "print,graphMCP-method",
        "setEdge",
        "setEdge,character,character,graphMCP,character-method",
        "setEdge,character,character,graphMCP,numeric-method",
        "setRejected<-",
        "setRejected<-,graphMCP-method",
        "setWeights",
        "setWeights,graphMCP-method"
      ]
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